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31 Oct 2019

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Research

Small molecule glue that distinguishes mutant from the wild-type HTT protein: potential entry points for Huntington's disease drug discovery

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Family photo of the research team

Profs. Boxun Lu (R) and his student

Prof. Yu Ding(R) and his student

Prof. Yiyan Fei (L) and her student

Huntington's disease (HD) is one of the four major neurodegenerative diseases that have been most extensively studied. The clinical symptoms include uncontrolled dancing-mimicking behavior (chorea), as well as cognitive deficiency and psychiatric abnormalities. Since the biochemical activity of the mutant huntingtin protein (mHTT) that causes the disease is uncharacterized, the conventional drug discovery approach relied on inhibitors that block the bioactivity of the pathogenic proteins is not applicable.


Recently, researchers at Fudan University, including Profs. Boxun Lu (School of Life Sciences), Yiyan Fei (School of Informatics Science and Engineering), and Yu Ding (School of Life Sciences), formed a multidisciplinary team to work on this problem. With joint efforts, they have worked out an innovative method of drug discovery: using the autophagosome-tethering compounds (ATTEC) to degrade pathogenic proteins and treat the disease. The team carried out a smartly-designed screening featuring small-molecule microarray and front-edge optical technologies, and managed to identify four small molecule compounds that specifically reduced the protein that caused Huntington's disease, bringing hope to the disease-progression-modifying treatment of this disease and similar diseases.


On October 31, the study was published online under the title “Allele-selective Lowering of Mutant HTT Protein by HTT-LC3 Linker Compounds” in Nature. Lu Boxun, Fei Yiyan and Ding Yu are the corresponding authors of the paper. Li Zhaoyang, Wang Cen, Wang Ziying and Zhu Chenggang, PhD. students at Fudan University, are the first authors. The research was jointly funded by National Natural Science Foundation of China and the Ministry of Science and Technology of China.


Demonstrating the new concept: “small molecule glue” helps autophagosomes “engulf” the disease-causing protein specifically

Since the conventional approach is infeasible for mHTT, the team came up with a fundamentally new idea, which was to degrade mHTT by harnessing autophagy, an intracellular protein degradation machinery. During autophagy, the key protein LC3 is lipidated and expanded to form a double-membrane structure, which then engulfs proteins, lipids, organelles and other degradation cargoes and forms a complete autophagosome. The autophagosomes are then fused with lysosomes and the engulfed therein is degraded.

The autophagy of mHTT 

However, with its strong degradation power, autophagy will degrade all proteins engulfed into autophagosomes, including the normal wild-type huntingtin protein that plays a role in neuroprotection and other important proteins, if enhanced non-specifically. This would be possibly self-defeating.


How can we identify compounds that only degrades mHTT but not wild-type HTT? The team envisioned a “small molecule glue” functioning as Autophagosome Tethering Compound (ATTEC), which could tether LC3 and mHTT together so that mHTT is engulfed into autophagosomes for degradation. Meanwhile, the ATTEC does not interact with the wild-type HTT protein, leaving it unaffected. Through screening, validation and preliminary search for structurally similar compounds, the team identified four compounds that had the desired properties above.

A shining “small molecule glue”, functioning as Autophagosome Tethering Compound (ATTEC), could tether LC3 (purple) and mHTT(blue) together so that mHTT is engulfed into autophagosomes for degradation.

At this point, the identified compounds have the potential of tethering mHTT to autophagosomes without influencing the wild-type HTT, but whether they do function in degrading mHTT as expected needs further validation. The team found that these four compounds significantly reduced mHTT levels in HD mouse neurons, HD patient cells, and HD Drosophila models at ~10 to 100 nanomolar concentrations, with little effect on wild-type HTT levels. Excitingly, at least two out of these four compounds are able to cross the blood-brain barrier, and a small dose of intraperitoneal injection would significantly reduce mHTT levels in the cortex and striatum of HD mice, without affecting wild-type HTT levels. They also significantly improved disease-related phenotypes, providing an entry point for the development of oral or injectable drugs for HD.


Cross-discipline collaboration making the new exciting idea feasible: small-molecule microarray and optical detection technology for high-throughput screening

In fact, such ATTECs were highly challenging to identify. Only one out of about two thousand compounds has the desired properties. It is like a needle in a haystack. Thus finding it had been a major obstacle of this project for a long time. The participation of the Professor Yiyan Fei’s group made this possible. Dr. Fei’s group developed a new high-throughput compound screening platform based on Small Molecule Microarray (SMM) and Oblique-Incidence Reflectivity Difference (OI-RD) technology, which was fast, sensitive, label-free and high-throughput. It could identify the target protein-interacting compounds from a library of thousands of small molecule compounds. 

The research team stamped nearly four thousand small-molecule compounds onto a chip and had the target protein flow through the chip. If it binds to a specific compound immobilized onto the chip, the molecular layer at the position will thicken, generating a tiny change that can be detected by a sensitive optical method (oblique incident light reflection difference technique). Using this cutting-edge screening approach, the team found two small molecules that could bind to both LC3 and mHTT proteins, but not to wild-type HTT. After studying a panel of small molecule compounds with similar structures, a total of four ATTECs that bind LC3 and mutant HTT were identified and validated.


New prospects for application: autophagosome tethering compounds may open new windows for drug discovery

The team further explored the intrinsic mechanisms by which these small molecule compounds could distinguish between mutant and wild-type HTT proteins, which were almost identical except in the glutamine repeat (polyQ) length. It turned out that these compounds were bound to excessively long polyQ stretches that only appeared in mHTT.


Based on this, the team realized that the application of these small molecule compounds may reach far beyond the potential treatment of Huntington's disease. Nine human diseases are so called polyQ diseases, because they are caused by specific mutant proteins containing excessively long polyQ. Among them, spinocerebellar ataxia type III (SCA3) is the most common polyQ diseases in the Chinese population. 


The clinical symptoms include motion discoordination, inability to maintain body posture and balance, accompanied by possible exophthalmos, hyperreflexia, facial muscle twitching, tendon and other symptoms. With SCA3 patient cells provided by Dr. Yimin Sun from Prof. Jian Wang’s group at Huashan Hospital affiliated to Fudan University, the team found that these compounds could effectively reduce the level of the mutant ATXN3 protein (with a polyQ length of 74) that causes the disease, without affecting the wild-type ATXN3 (with a polyQ length of 27). 


When it came to the future development and applications of this study, Boxun Lu was full of expectations: “These compounds may not only be effective in the treatment of Huntington’s disease, but also applicable to other polyQ diseases. The new concept of drug development using autophagosome-binding compounds (ATTEC) may also be applied to other pathogenic proteins that are undruggable, or even to pathogenic substances that are not proteins, such as organelles or lipids.”


The world class expert in the neurodegenerative disease field and member of National Academy of Sciences and winner of Breakthrough Prize in Life Sciences, Huda Zoghbi, wrote a commentary article in Nature for this research: “exciting discovery”, “this therapeutic strategy might be useful not only for Huntington’s disease, but also for other diseases involving expanded polyglutamine tracts.



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